PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g29900.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 468aa    MW: 51307.7 Da    PI: 6.955
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g29900.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11287329754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+++N+++  Lr+++P+ +      K++ a+iL  AveY+k+L
  Vradi07g29900.1 287 MAERRRRKKLNDRLYMLRSVVPNiS------KMDRASILGDAVEYLKEL 329
                      79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.834280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16284349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-15286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9286329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.75E-13287333No hitNo description
Gene3DG3DSA:4.10.280.109.1E-16287343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550219.16E-5392466No hitNo description
CDDcd048734.44E-5396456No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MMSGWMQDTE EQNSASWSNP NANELSCFYK PISDIHEEWH VPNNNTQIHS HVRDTAFSTN  60
FDHNMLLHQH QPLHSFSSST SLHLSQGHNF FTPKPFFYPL DHTFRAGSDV GFLDPHALNK  120
VHHGGVFSSS NDNNQLALPN LATMCALPPQ QDGVGFPGFK NVVDSDHVEG SRKPLLLTTS  180
NVLKPLESFP ASGVQPTLFQ KRAALRKSME DNCKGKSKGN SDSSKRKTYK NGEGDEGSGL  240
NLDSDESGEM EESGRNGGNS SNANSTVTGG VDHKGKKKTG IPAKNLMAER RRRKKLNDRL  300
YMLRSVVPNI SKMDRASILG DAVEYLKELL QKIGDLHNEL ESTTPAGSSL TSSFLHPLTP  360
KLPTSMQEEL CLSSLPSPNG QPVRVEVGLS EGGVKIQMCC ERKPGLLLCT MRALDNLGID  420
IHQAVITYFN GFAMDILRAQ ICSEGQDVRP EQIKAVLLDS AGYHGMI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275294KKKTGIPAKNLMAERRRRKK
2288295ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508670.10.0PREDICTED: transcription factor ICE1-like isoform X1
SwissprotQ9LSE21e-103ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0S3QXX30.0A0A0S3QXX3_PHAAN; Uncharacterized protein
STRINGGLYMA05G38530.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-96bHLH family protein